Reactome

REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic and clinical research, genome analysis, modeling, systems biology and education.

Version: 07a8dc1cac1936b5

URL: https://reactome.org/

Files: https://stars.renci.org/var/plater/bl-4.2.1/Reactome_Automat/07a8dc1cac1936b5/

Nodes: 626,481

Edges: 2,018,587

Query Endpoints

📄️ Accepts TRAPI Queries.

Accepts a TRAPI Query and returns a TRAPI Response. (https://github.com/NCATSTranslator/ReasonerAPI/)

📄️ Run a Neo4j cypher query.

Runs a cypher query against the Neo4j instance, and returns an equivalent response expected from a Neo4j HTTP endpoint (https://neo4j.com/docs/rest-docs/current/).

📄️ Find `node` by `curie`

Returns `node` matching `curie`.

📄️ Get one hop results from source type to target type.

Returns one hop paths from `source_node_type` with `curie` to `target_node_type`.

📄️ Get one-hop connection schema

Returns a list of available predicates when choosing a single source or target curie. Calling this endpoint with no query parameters will return all possible hops for all types.

Metadata Endpoints

📄️ Metadata about the knowledge graph.

Returns JSON with metadata about the data sources in this knowledge graph.

📄️ Meta knowledge graph representation of this TRAPI web service.

Returns a meta knowledge graph representation of this TRAPI web service. The meta knowledge graph is composed of the union of most specific categories and predicates for each node and edge.

📄️ Test data for usage by the SRI Testing Harness.

Returns a list of edges that are representative examples of the knowledge graph.