Accepts TRAPI Queries.

POST 
https://robokop-automat.apps.renci.org/reactome/query

Accepts a TRAPI Query and returns a TRAPI Response. (https://github.com/NCATSTranslator/ReasonerAPI/)

Schema

Request

Query Parameters

profile Profile
validate Validate
subclass Subclass

Default value: true

application/json

Body

required

message object
Message.
query_graph objectnullable
Query graph.
nodes objectrequired
Custom class that implements MutableMapping and is hashable
property name* query-graph node
Query node.
ids string[]nullable
Default value: ``
Custom class that implements MutableSequence and is hashable
categories string[]nullable
Possible values: Value must match regular expression ^biolink:[A-Z][a-zA-Z]*$
Default value: ``
Custom class that implements MutableSequence and is hashable
set_interpretation SetInterpretationEnumnullable
Possible values: [BATCH, ALL, MANY]
Default value: BATCH
Enumeration for set interpretation.
constraints object[]
Custom class that implements MutableSequence and is hashable
Array [
name namerequired
id idrequired
not not
Default value: false
operator operatorrequired
Possible values: [==, ===, >, <, matches]
Operator.
value valuerequired
unit_id unit_id
unit_name unit_name
]
member_ids string[]
Default value: [object Object]
Custom class that implements MutableSequence and is hashable
edges objectrequired
Custom class that implements MutableMapping and is hashable
property name* query-graph edge
Query edge.
subject subject node idrequired
object object node idrequired
knowledge_type knowledge type
Possible values: [lookup, inferred]
Knowledge Type.
predicates string[]nullable
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
Default value: ``
Custom class that implements MutableSequence and is hashable
attribute_constraints object[]
Custom class that implements MutableSequence and is hashable
Array [
name namerequired
id idrequired
not not
Default value: false
operator operatorrequired
Possible values: [==, ===, >, <, matches]
Operator.
value valuerequired
unit_id unit_id
unit_name unit_name
]
qualifier_constraints object[]
Custom class that implements MutableSequence and is hashable
Array [
qualifier_set object[]
Custom class that implements MutableSequence and is hashable
Array [
qualifier_type_id typerequired
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
qualifier_value valuerequired
]
]
knowledge_graph objectnullable
Knowledge graph.
nodes objectrequired
Custom class that implements MutableMapping and is hashable
property name* knowledge-graph node
Knowledge graph node.
categories string[]required
Possible values: Value must match regular expression ^biolink:[A-Z][a-zA-Z]*$
Default value: ``
Custom class that implements MutableSet and is hashable
name Namenullable
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
is_set Is Set
edges objectrequired
Custom class that implements MutableMapping and is hashable
property name* knowledge-graph edge
Knowledge graph edge.
subject subject node idrequired
object object node idrequired
predicate edge predicaterequired
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
sources object[]required
Custom class that implements MutableSet and is hashable
Array [
resource_id infores for sourcerequired
resource_role source typerequired
Possible values: [aggregator_knowledge_source, primary_knowledge_source, supporting_data_source]
Types of resources
upstream_resource_ids string[]nullable
Default value: ``
Custom class that implements MutableSet and is hashable
source_record_urls string[]nullable
Default value: ``
Custom class that implements MutableSet and is hashable
]
qualifiers object[]nullable
Custom class that implements MutableSet and is hashable
Array [
qualifier_type_id typerequired
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
qualifier_value valuerequired
]
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
results object[]nullable
Results.
Array [
node_bindings objectrequired
Custom class that implements MutableMapping and is hashable
property name* HashableSet[NodeBinding]
Custom class that implements MutableSet and is hashable
Array [
id knowledge graph idrequired
query_id query graph id
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
]
analyses object[]required
Custom class that implements MutableSet and is hashable
Array [
resource_id resource inforesrequired
edge_bindings objectrequired
Custom class that implements MutableMapping and is hashable
property name* HashableSet[EdgeBinding]
Custom class that implements MutableSet and is hashable
Array [
id knowledge graph idrequired
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
]
score float
support_graphs string[]nullable
Default value: ``
Custom class that implements MutableSet and is hashable
scoring_method Scoring Methodnullable
attributes object[]nullable
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
]
]
auxiliary_graphs objectnullable
Auxiliary Graphs
property name* auxiliary graphnullable
Auxiliary Graph
edges string[]required
Default value: ``
Custom class that implements MutableSet and is hashable
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
log_level object

Log level.

workflow object[]
Custom base model for all classes
This provides hash and equality methods.
Array [
anyOf
OperationAnnotate
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id annotaterequired
Possible values: [annotate]
An enumeration.
parameters Parameters
OperationAnnotateEdges
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id annotate_edgesrequired
Possible values: [annotate_edges]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
attributes string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationAnnotateNodes
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id annotate_nodesrequired
Possible values: [annotate_nodes]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
attributes string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationBind
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id bindrequired
Possible values: [bind]
An enumeration.
parameters Parameters
OperationCompleteResults
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id complete_resultsrequired
Possible values: [complete_results]
An enumeration.
parameters Parameters
OperationEnrichResults
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id enrich_resultsrequired
Possible values: [enrich_results]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
pvalue_threshold Pvalue Threshold
Possible values: <= 1
Default value: 0.000001
qnode_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
predicates_to_exclude string[]
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFill
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id fillrequired
Possible values: [fill]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
FillAllowParameters
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
FillDenyParameters
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraph
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraphrequired
Possible values: [filter_kgraph]
An enumeration.
parameters Parameters
OperationFilterKgraphContinuousKedgeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_continuous_kedge_attributerequired
Possible values: [filter_kgraph_continuous_kedge_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
threshold Thresholdrequired
remove_above_or_below AboveOrBelowEnumrequired
Possible values: [above, below]
'above' or 'below'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphDiscreteKedgeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_discrete_kedge_attributerequired
Possible values: [filter_kgraph_discrete_kedge_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
remove_value Remove Value
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphDiscreteKnodeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_discrete_knode_attributerequired
Possible values: [filter_kgraph_discrete_knode_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
node_attribute Node Attributerequired
remove_value Remove Value
qnode_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphOrphans
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_orphansrequired
Possible values: [filter_kgraph_orphans]
An enumeration.
parameters Parameters
OperationFilterKgraphPercentile
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_percentilerequired
Possible values: [filter_kgraph_percentile]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
threshold Threshold
Possible values: <= 100
Default value: 95
remove_above_or_below object
'above' or 'below'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphStdDev
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_std_devrequired
Possible values: [filter_kgraph_std_dev]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
plus_or_minus_std_dev object
'plus' or 'minus'.
num_sigma Num Sigma
Default value: 1
remove_above_or_below object
'above' or 'below'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphTopN
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_top_nrequired
Possible values: [filter_kgraph_top_n]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
max_edges Max Edges
Default value: 50
remove_top_or_bottom object
'top' or 'bottom'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterResults
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_resultsrequired
Possible values: [filter_results]
An enumeration.
parameters Parameters
OperationFilterResultsTopN
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_results_top_nrequired
Possible values: [filter_results_top_n]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
max_results Max Resultsrequired
OperationLookup
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id lookuprequired
Possible values: [lookup]
An enumeration.
parameters Parameters
OperationLookupAndScore
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id lookup_and_scorerequired
Possible values: [lookup_and_score]
An enumeration.
parameters Parameters
OperationOverlay
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlayrequired
Possible values: [overlay]
An enumeration.
parameters Parameters
OperationOverlayComputeJaccard
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlay_compute_jaccardrequired
Possible values: [overlay_compute_jaccard]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
intermediate_node_key Intermediate Node Keyrequired
end_node_keys string[]required
Default value: ``
Custom class that implements MutableSequence and is hashable
virtual_relation_label Virtual Relation Labelrequired
OperationOverlayComputeNgd
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlay_compute_ngdrequired
Possible values: [overlay_compute_ngd]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
qnode_keys string[]required
Default value: ``
Custom class that implements MutableSequence and is hashable
virtual_relation_label Virtual Relation Labelrequired
OperationOverlayConnectKnodes
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlay_connect_knodesrequired
Possible values: [overlay_connect_knodes]
An enumeration.
parameters Parameters
OperationOverlayFisherExactTest
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlay_fisher_exact_testrequired
Possible values: [overlay_fisher_exact_test]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
subject_qnode_key Subject Qnode Keyrequired
object_qnode_key Object Qnode Keyrequired
virtual_relation_label Virtual Relation Labelrequired
rel_edge_key Rel Edge Key
OperationRestate
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id restaterequired
Possible values: [restate]
An enumeration.
parameters Parameters
OperationScore
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id scorerequired
Possible values: [score]
An enumeration.
parameters Parameters
OperationSortResults
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id sort_resultsrequired
Possible values: [sort_results]
An enumeration.
parameters Parameters
OperationSortResultsEdgeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id sort_results_edge_attributerequired
Possible values: [sort_results_edge_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
ascending_or_descending AscOrDescEnumrequired
Possible values: [ascending, descending]
'ascending' or 'descending'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationSortResultsNodeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id sort_results_node_attributerequired
Possible values: [sort_results_node_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
node_attribute Node Attributerequired
ascending_or_descending AscOrDescEnumrequired
Possible values: [ascending, descending]
'ascending' or 'descending'.
qnode_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationSortResultsScore
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id sort_results_scorerequired
Possible values: [sort_results_score]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
ascending_or_descending AscOrDescEnumrequired
Possible values: [ascending, descending]
'ascending' or 'descending'.
]
bypass_cache Bypass Cache

Responses

200

Successful Response

application/json

Schema

Schema

message object
Message.
query_graph objectnullable
Query graph.
nodes objectrequired
Custom class that implements MutableMapping and is hashable
property name* query-graph node
Query node.
ids string[]nullable
Default value: ``
Custom class that implements MutableSequence and is hashable
categories string[]nullable
Possible values: Value must match regular expression ^biolink:[A-Z][a-zA-Z]*$
Default value: ``
Custom class that implements MutableSequence and is hashable
set_interpretation SetInterpretationEnumnullable
Possible values: [BATCH, ALL, MANY]
Default value: BATCH
Enumeration for set interpretation.
constraints object[]
Custom class that implements MutableSequence and is hashable
Array [
name namerequired
id idrequired
not not
Default value: false
operator operatorrequired
Possible values: [==, ===, >, <, matches]
Operator.
value valuerequired
unit_id unit_id
unit_name unit_name
]
member_ids string[]
Default value: [object Object]
Custom class that implements MutableSequence and is hashable
edges objectrequired
Custom class that implements MutableMapping and is hashable
property name* query-graph edge
Query edge.
subject subject node idrequired
object object node idrequired
knowledge_type knowledge type
Possible values: [lookup, inferred]
Knowledge Type.
predicates string[]nullable
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
Default value: ``
Custom class that implements MutableSequence and is hashable
attribute_constraints object[]
Custom class that implements MutableSequence and is hashable
Array [
name namerequired
id idrequired
not not
Default value: false
operator operatorrequired
Possible values: [==, ===, >, <, matches]
Operator.
value valuerequired
unit_id unit_id
unit_name unit_name
]
qualifier_constraints object[]
Custom class that implements MutableSequence and is hashable
Array [
qualifier_set object[]
Custom class that implements MutableSequence and is hashable
Array [
qualifier_type_id typerequired
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
qualifier_value valuerequired
]
]
knowledge_graph objectnullable
Knowledge graph.
nodes objectrequired
Custom class that implements MutableMapping and is hashable
property name* knowledge-graph node
Knowledge graph node.
categories string[]required
Possible values: Value must match regular expression ^biolink:[A-Z][a-zA-Z]*$
Default value: ``
Custom class that implements MutableSet and is hashable
name Namenullable
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
is_set Is Set
edges objectrequired
Custom class that implements MutableMapping and is hashable
property name* knowledge-graph edge
Knowledge graph edge.
subject subject node idrequired
object object node idrequired
predicate edge predicaterequired
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
sources object[]required
Custom class that implements MutableSet and is hashable
Array [
resource_id infores for sourcerequired
resource_role source typerequired
Possible values: [aggregator_knowledge_source, primary_knowledge_source, supporting_data_source]
Types of resources
upstream_resource_ids string[]nullable
Default value: ``
Custom class that implements MutableSet and is hashable
source_record_urls string[]nullable
Default value: ``
Custom class that implements MutableSet and is hashable
]
qualifiers object[]nullable
Custom class that implements MutableSet and is hashable
Array [
qualifier_type_id typerequired
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
qualifier_value valuerequired
]
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
results object[]nullable
Results.
Array [
node_bindings objectrequired
Custom class that implements MutableMapping and is hashable
property name* HashableSet[NodeBinding]
Custom class that implements MutableSet and is hashable
Array [
id knowledge graph idrequired
query_id query graph id
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
]
analyses object[]required
Custom class that implements MutableSet and is hashable
Array [
resource_id resource inforesrequired
edge_bindings objectrequired
Custom class that implements MutableMapping and is hashable
property name* HashableSet[EdgeBinding]
Custom class that implements MutableSet and is hashable
Array [
id knowledge graph idrequired
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
]
score float
support_graphs string[]nullable
Default value: ``
Custom class that implements MutableSet and is hashable
scoring_method Scoring Methodnullable
attributes object[]nullable
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
]
]
auxiliary_graphs objectnullable
Auxiliary Graphs
property name* auxiliary graphnullable
Auxiliary Graph
edges string[]required
Default value: ``
Custom class that implements MutableSet and is hashable
attributes object[]required
Custom class that implements MutableSet and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes object[]nullable
Custom class that implements MutableSequence and is hashable
Array [
attribute_type_id typerequired
value valuerequired
value_type_id value_type_idnullable
original_attribute_name Original Attribute Namenullable
value_url Value Urlnullable
attribute_source Attribute Sourcenullable
description Descriptionnullable
attributes Attributesnullable
]
]
]
log_level object

Log level.

workflow object[]
Custom base model for all classes
This provides hash and equality methods.
Array [
anyOf
OperationAnnotate
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id annotaterequired
Possible values: [annotate]
An enumeration.
parameters Parameters
OperationAnnotateEdges
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id annotate_edgesrequired
Possible values: [annotate_edges]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
attributes string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationAnnotateNodes
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id annotate_nodesrequired
Possible values: [annotate_nodes]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
attributes string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationBind
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id bindrequired
Possible values: [bind]
An enumeration.
parameters Parameters
OperationCompleteResults
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id complete_resultsrequired
Possible values: [complete_results]
An enumeration.
parameters Parameters
OperationEnrichResults
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id enrich_resultsrequired
Possible values: [enrich_results]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
pvalue_threshold Pvalue Threshold
Possible values: <= 1
Default value: 0.000001
qnode_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
predicates_to_exclude string[]
Possible values: Value must match regular expression ^biolink:[a-z][a-z_]*$
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFill
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id fillrequired
Possible values: [fill]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
FillAllowParameters
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
FillDenyParameters
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraph
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraphrequired
Possible values: [filter_kgraph]
An enumeration.
parameters Parameters
OperationFilterKgraphContinuousKedgeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_continuous_kedge_attributerequired
Possible values: [filter_kgraph_continuous_kedge_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
threshold Thresholdrequired
remove_above_or_below AboveOrBelowEnumrequired
Possible values: [above, below]
'above' or 'below'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphDiscreteKedgeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_discrete_kedge_attributerequired
Possible values: [filter_kgraph_discrete_kedge_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
remove_value Remove Value
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphDiscreteKnodeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_discrete_knode_attributerequired
Possible values: [filter_kgraph_discrete_knode_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
node_attribute Node Attributerequired
remove_value Remove Value
qnode_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphOrphans
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_orphansrequired
Possible values: [filter_kgraph_orphans]
An enumeration.
parameters Parameters
OperationFilterKgraphPercentile
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_percentilerequired
Possible values: [filter_kgraph_percentile]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
threshold Threshold
Possible values: <= 100
Default value: 95
remove_above_or_below object
'above' or 'below'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphStdDev
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_std_devrequired
Possible values: [filter_kgraph_std_dev]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
plus_or_minus_std_dev object
'plus' or 'minus'.
num_sigma Num Sigma
Default value: 1
remove_above_or_below object
'above' or 'below'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterKgraphTopN
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_kgraph_top_nrequired
Possible values: [filter_kgraph_top_n]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
max_edges Max Edges
Default value: 50
remove_top_or_bottom object
'top' or 'bottom'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
qnode_keys object
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationFilterResults
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_resultsrequired
Possible values: [filter_results]
An enumeration.
parameters Parameters
OperationFilterResultsTopN
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id filter_results_top_nrequired
Possible values: [filter_results_top_n]
An enumeration.
parameters object
Custom base model for all classes
This provides hash and equality methods.
max_results Max Resultsrequired
OperationLookup
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id lookuprequired
Possible values: [lookup]
An enumeration.
parameters Parameters
OperationLookupAndScore
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id lookup_and_scorerequired
Possible values: [lookup_and_score]
An enumeration.
parameters Parameters
OperationOverlay
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlayrequired
Possible values: [overlay]
An enumeration.
parameters Parameters
OperationOverlayComputeJaccard
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlay_compute_jaccardrequired
Possible values: [overlay_compute_jaccard]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
intermediate_node_key Intermediate Node Keyrequired
end_node_keys string[]required
Default value: ``
Custom class that implements MutableSequence and is hashable
virtual_relation_label Virtual Relation Labelrequired
OperationOverlayComputeNgd
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlay_compute_ngdrequired
Possible values: [overlay_compute_ngd]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
qnode_keys string[]required
Default value: ``
Custom class that implements MutableSequence and is hashable
virtual_relation_label Virtual Relation Labelrequired
OperationOverlayConnectKnodes
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlay_connect_knodesrequired
Possible values: [overlay_connect_knodes]
An enumeration.
parameters Parameters
OperationOverlayFisherExactTest
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id overlay_fisher_exact_testrequired
Possible values: [overlay_fisher_exact_test]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
subject_qnode_key Subject Qnode Keyrequired
object_qnode_key Object Qnode Keyrequired
virtual_relation_label Virtual Relation Labelrequired
rel_edge_key Rel Edge Key
OperationRestate
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id restaterequired
Possible values: [restate]
An enumeration.
parameters Parameters
OperationScore
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id scorerequired
Possible values: [score]
An enumeration.
parameters Parameters
OperationSortResults
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id sort_resultsrequired
Possible values: [sort_results]
An enumeration.
parameters Parameters
OperationSortResultsEdgeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id sort_results_edge_attributerequired
Possible values: [sort_results_edge_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
edge_attribute Edge Attributerequired
ascending_or_descending AscOrDescEnumrequired
Possible values: [ascending, descending]
'ascending' or 'descending'.
qedge_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationSortResultsNodeAttribute
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id sort_results_node_attributerequired
Possible values: [sort_results_node_attribute]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
node_attribute Node Attributerequired
ascending_or_descending AscOrDescEnumrequired
Possible values: [ascending, descending]
'ascending' or 'descending'.
qnode_keys string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
OperationSortResultsScore
runner_parameters object
Custom base model for all classes
This provides hash and equality methods.
anyOf
RunnerAllowList
allowlist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerDenyList
denylist string[]
Default value: ``
Custom class that implements MutableSequence and is hashable
timeout Timeout
RunnerTimeout
timeout Timeout
id sort_results_scorerequired
Possible values: [sort_results_score]
An enumeration.
parameters objectrequired
Custom base model for all classes
This provides hash and equality methods.
ascending_or_descending AscOrDescEnumrequired
Possible values: [ascending, descending]
'ascending' or 'descending'.
]
bypass_cache Bypass Cache

Example (from schema)

{
  "message": {
    "query_graph": {
      "nodes": {},
      "edges": {}
    },
    "knowledge_graph": {
      "nodes": {},
      "edges": {}
    },
    "results": [
      {
        "node_bindings": {},
        "analyses": [
          {
            "resource_id": "string",
            "edge_bindings": {},
            "score": 0,
            "support_graphs": [
              "string"
            ],
            "scoring_method": "string",
            "attributes": [
              {
                "attribute_type_id": "string",
                "value_type_id": "string",
                "original_attribute_name": "string",
                "value_url": "string",
                "attribute_source": "string",
                "description": "string",
                "attributes": [
                  {
                    "attribute_type_id": "string",
                    "value_type_id": "string",
                    "original_attribute_name": "string",
                    "value_url": "string",
                    "attribute_source": "string",
                    "description": "string",
                    "attributes": [
                      {
                        "attribute_type_id": "string",
                        "value_type_id": "string",
                        "original_attribute_name": "string",
                        "value_url": "string",
                        "attribute_source": "string",
                        "description": "string"
                      }
                    ]
                  }
                ]
              }
            ]
          }
        ]
      }
    ],
    "auxiliary_graphs": {}
  },
  "log_level": "ERROR",
  "workflow": [
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {},
    {}
  ],
  "bypass_cache": true
}

400

Bad Request

application/json

Schema

Schema

object

Example (from schema)

{}

422

Validation Error

application/json

Schema

Schema

detail object[]
Array [
loc object[]required
Array [
anyOf
MOD1
string
MOD2
integer
]
msg Messagerequired
type Error Typerequired
]

Example (from schema)

{
  "detail": [
    {
      "loc": [
        "string",
        0
      ],
      "msg": "string",
      "type": "string"
    }
  ]
}

• curl
• python
• go
• nodejs
• ruby
• csharp
• php
• java
• powershell

• CURL

curl -L -X POST 'https://robokop-automat.apps.renci.org/reactome/query' \
-H 'Content-Type: application/json' \
-H 'Accept: application/json' \
--data-raw '{
  "message": {
    "query_graph": {
      "nodes": {},
      "edges": {}
    },
    "knowledge_graph": {
      "nodes": {},
      "edges": {}
    },
    "results": [
      {
        "node_bindings": {},
        "analyses": [
          {
            "resource_id": "string",
            "edge_bindings": {},
            "score": 0,
            "support_graphs": [
              "string"
            ],
            "scoring_method": "string",
            "attributes": [
              {
                "attribute_type_id": "string",
                "value_type_id": "string",
                "original_attribute_name": "string",
                "value_url": "string",
                "attribute_source": "string",
                "description": "string",
                "attributes": [
                  {
                    "attribute_type_id": "string",
                    "value_type_id": "string",
                    "original_attribute_name": "string",
                    "value_url": "string",
                    "attribute_source": "string",
                    "description": "string",
                    "attributes": [
                      {
                        "attribute_type_id": "string",
                        "value_type_id": "string",
                        "original_attribute_name": "string",
                        "value_url": "string",
                        "attribute_source": "string",
                        "description": "string"
                      }
                    ]
                  }
                ]
              }
            ]
          }
        ]
      }
    ],
    "auxiliary_graphs": {}
  },
  "log_level": "ERROR",
  "workflow": [
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "annotate"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "annotate_edges",
      "parameters": {
        "attributes": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "annotate_nodes",
      "parameters": {
        "attributes": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "bind"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "complete_results"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "enrich_results",
      "parameters": {
        "pvalue_threshold": 0.000001,
        "qnode_keys": [
          "string"
        ],
        "predicates_to_exclude": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "fill",
      "parameters": {
        "allowlist": [
          "string"
        ],
        "qedge_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_continuous_kedge_attribute",
      "parameters": {
        "edge_attribute": "string",
        "threshold": 0,
        "remove_above_or_below": "above",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_discrete_kedge_attribute",
      "parameters": {
        "edge_attribute": "string",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_discrete_knode_attribute",
      "parameters": {
        "node_attribute": "string",
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_orphans"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_percentile",
      "parameters": {
        "edge_attribute": "string",
        "threshold": 95,
        "remove_above_or_below": "above",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_std_dev",
      "parameters": {
        "edge_attribute": "string",
        "plus_or_minus_std_dev": "plus",
        "num_sigma": 1,
        "remove_above_or_below": "above",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_top_n",
      "parameters": {
        "edge_attribute": "string",
        "max_edges": 50,
        "remove_top_or_bottom": "top",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_results"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_results_top_n",
      "parameters": {
        "max_results": 0
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "lookup"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "lookup_and_score"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay_compute_jaccard",
      "parameters": {
        "intermediate_node_key": "string",
        "end_node_keys": [
          "string"
        ],
        "virtual_relation_label": "string"
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay_compute_ngd",
      "parameters": {
        "qnode_keys": [
          "string"
        ],
        "virtual_relation_label": "string"
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay_connect_knodes"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay_fisher_exact_test",
      "parameters": {
        "subject_qnode_key": "string",
        "object_qnode_key": "string",
        "virtual_relation_label": "string",
        "rel_edge_key": "string"
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "restate"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "score"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "sort_results"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "sort_results_edge_attribute",
      "parameters": {
        "edge_attribute": "string",
        "ascending_or_descending": "ascending",
        "qedge_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "sort_results_node_attribute",
      "parameters": {
        "node_attribute": "string",
        "ascending_or_descending": "ascending",
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "sort_results_score",
      "parameters": {
        "ascending_or_descending": "ascending"
      }
    }
  ],
  "bypass_cache": true
}'

Request Collapse all

Base URL

https://robokop-automat.apps.renci.org

Parameters

profile — query

---truefalse

validate — query

---truefalse

subclass — query

---truefalse

Body required

• Example (from schema)
• Example

{
  "message": {
    "query_graph": {
      "nodes": {},
      "edges": {}
    },
    "knowledge_graph": {
      "nodes": {},
      "edges": {}
    },
    "results": [
      {
        "node_bindings": {},
        "analyses": [
          {
            "resource_id": "string",
            "edge_bindings": {},
            "score": 0,
            "support_graphs": [
              "string"
            ],
            "scoring_method": "string",
            "attributes": [
              {
                "attribute_type_id": "string",
                "value_type_id": "string",
                "original_attribute_name": "string",
                "value_url": "string",
                "attribute_source": "string",
                "description": "string",
                "attributes": [
                  {
                    "attribute_type_id": "string",
                    "value_type_id": "string",
                    "original_attribute_name": "string",
                    "value_url": "string",
                    "attribute_source": "string",
                    "description": "string",
                    "attributes": [
                      {
                        "attribute_type_id": "string",
                        "value_type_id": "string",
                        "original_attribute_name": "string",
                        "value_url": "string",
                        "attribute_source": "string",
                        "description": "string"
                      }
                    ]
                  }
                ]
              }
            ]
          }
        ]
      }
    ],
    "auxiliary_graphs": {}
  },
  "log_level": "ERROR",
  "workflow": [
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "annotate"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "annotate_edges",
      "parameters": {
        "attributes": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "annotate_nodes",
      "parameters": {
        "attributes": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "bind"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "complete_results"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "enrich_results",
      "parameters": {
        "pvalue_threshold": 0.000001,
        "qnode_keys": [
          "string"
        ],
        "predicates_to_exclude": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "fill",
      "parameters": {
        "allowlist": [
          "string"
        ],
        "qedge_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_continuous_kedge_attribute",
      "parameters": {
        "edge_attribute": "string",
        "threshold": 0,
        "remove_above_or_below": "above",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_discrete_kedge_attribute",
      "parameters": {
        "edge_attribute": "string",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_discrete_knode_attribute",
      "parameters": {
        "node_attribute": "string",
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_orphans"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_percentile",
      "parameters": {
        "edge_attribute": "string",
        "threshold": 95,
        "remove_above_or_below": "above",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_std_dev",
      "parameters": {
        "edge_attribute": "string",
        "plus_or_minus_std_dev": "plus",
        "num_sigma": 1,
        "remove_above_or_below": "above",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_kgraph_top_n",
      "parameters": {
        "edge_attribute": "string",
        "max_edges": 50,
        "remove_top_or_bottom": "top",
        "qedge_keys": [
          "string"
        ],
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_results"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "filter_results_top_n",
      "parameters": {
        "max_results": 0
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "lookup"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "lookup_and_score"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay_compute_jaccard",
      "parameters": {
        "intermediate_node_key": "string",
        "end_node_keys": [
          "string"
        ],
        "virtual_relation_label": "string"
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay_compute_ngd",
      "parameters": {
        "qnode_keys": [
          "string"
        ],
        "virtual_relation_label": "string"
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay_connect_knodes"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "overlay_fisher_exact_test",
      "parameters": {
        "subject_qnode_key": "string",
        "object_qnode_key": "string",
        "virtual_relation_label": "string",
        "rel_edge_key": "string"
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "restate"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "score"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "sort_results"
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "sort_results_edge_attribute",
      "parameters": {
        "edge_attribute": "string",
        "ascending_or_descending": "ascending",
        "qedge_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "sort_results_node_attribute",
      "parameters": {
        "node_attribute": "string",
        "ascending_or_descending": "ascending",
        "qnode_keys": [
          "string"
        ]
      }
    },
    {
      "runner_parameters": {
        "allowlist": [
          "string"
        ],
        "timeout": 0
      },
      "id": "sort_results_score",
      "parameters": {
        "ascending_or_descending": "ascending"
      }
    }
  ],
  "bypass_cache": true
}

ResponseClear

Click the Send API Request button above and see the response here!